FASTX-Toolkit

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所属分类:Bioinformatics

FASTX-Toolkit是一款用于处理Short-Reads FASTA/FASTQ文件的程序,里面包含了丰富的FASTA/FASTQ文件格式转换、统计等命令。

下面是其功能介绍:

  •  FASTQ-to-FASTA converter (FASTQ转换成Fasta)
    Convert FASTQ files to FASTA files.
  • FASTQ Information(FastQ质量统计图、核酸长度分布)
    Chart Quality Statistics and Nucleotide Distribution
  • FASTQ/A Collapser
    Collapsing identical sequences in a FASTQ/A file into a single sequence (while maintaining reads counts)
  • FASTQ/A Trimmer (去掉FASTA/FASTQ中barcode序列)
    Shortening reads in a FASTQ or FASTQ files (removing barcodes or noise).
  • FASTQ/A Renamer(批量对FASTA/FASTQ序列重命名)
    Renames the sequence identifiers in FASTQ/A file.
  • FASTQ/A Clipper(去掉FASTA/FASTQ中接头序列)
    Removing sequencing adapters / linkers
  • FASTQ/A Reverse-Complement
    Producing the Reverse-complement of each sequence in a FASTQ/FASTA file.
  • FASTQ/A Barcode splitter
    Splitting a FASTQ/FASTA files containning multiple samples
  • FASTA Formatter
    changes the width of sequences line in a FASTA file
  • FASTA Nucleotide Changer
    Convets FASTA sequences from/to RNA/DNA
  • FASTQ Quality Filter
    Filters sequences based on quality
  • FASTQ Quality Trimmer
    Trims (cuts) sequences based on quality
  • FASTQ Masker
    Masks nucleotides with 'N' (or other character) based on quality

软件下载地址:http://hannonlab.cshl.edu/fastx_toolkit/download.html

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