Promoter预测的相关软件及各个软件比较

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所属分类:Bioinformatics

在过去几年各个实验室都开发了不同的Promoter prediction program(启动子预测软件),但每个promoter预测软件设计的立足点各有差异,如何选择一直以来是大家比较关注的问题。

近期读了一篇文章,用多种方法对目前已有的多款promoter预测软件进行了评估。下面是该文章中设计的相关promoter软件:

ARTS, CpGcluster, CpGProD, DragonGSF, DragonPF, EP3, Eponine, FirstEF, McPromoter, NNPP2.2, Nscan, Promoter 2.0, PromoterExplorer, PromoterScan, ProSOM, PSPA, Wu-method.

相关论文:Toward a gold standard for promoter prediction evaluation。http://bioinformatics.oxfordjournals.org/content/25/12/i313.short?rss=1

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    • avatar boya888 3

      They report, we decide! :wink:
      They used release hg18 of the human genome for all analyses. For the
      validation protocols, they use the RefSeq genes downloaded from the UCSC
      table browser.