欢迎光临!
登录
  • 关于我们
  • 广而告之

    Public Library of Bioinformatics Public Library of Bioinformatics

    • 首页
    • 分类文章
      • Bioinformatics
      • Machine Learning
      • Transcriptomics
      • Genomics
      • Single Cell
      • Epigenetics
      • Statistics
      • Script
      • Evolution
      • Glossary
      • ncRNA
      • Advance
      • Popular Science
    • 文章汇总
    • 在线文档
      • ggplot2画图教程
      • 鸟哥的Linux私房菜
      • Perl教程
      • 机器学习

      搜索热点

      首页newbler
      一种基于454数据拼接植物细胞器基因组的策略 Genomics

      一种基于454数据拼接植物细胞器基因组的策略

      一般在基因组组装中,我们常用的拼接方法是,对测序得到的二代数据直接用soapdenovo等软件进行基因组组装。但是这些方法一般只是适用于单一的基因组序列。 最近做的一个课题是从植物混合测序的数据中(核...
      06月22日2,9819
      阅读全文
      Running newbler: more de novo assembly parameters Genomics

      Running newbler: more de novo assembly parameters

      There is a long list of options/flags/parameters for a newbler assembly, some of which have been tre...
      03月31日1,933评论
      阅读全文
      Running newbler: de novo assembly Bioinformatics

      Running newbler: de novo assembly

      This post is about how to start up newbler for de novo assembly projects. I will describe setting up...
      03月31日2,650评论
      阅读全文
      Newbler output VI: the ‘status’ files Genomics

      Newbler output VI: the ‘status’ files

      The files that are the topic of this post are all tables, i.e. tab separated text files. The ‘status...
      03月31日685评论
      阅读全文
      Newbler output V: the 454ContigScaffolds.txt and 454ScaffoldContigs.fna Genomics

      Newbler output V: the 454ContigScaffolds.txt and 454ScaffoldContigs.fna

      In the post on what is new in newbler version 2.6, I introduced the -scaffold option. Briefly, with ...
      03月31日704评论
      阅读全文
      Newbler output IV: on ultra-short and single-read contigs Genomics

      Newbler output IV: on ultra-short and single-read contigs

      Sometimes you might observe very short contigs, some even having high read depth. You might see thes...
      03月31日1,023评论
      阅读全文
      Newbler output II: contigs and scaffolds sequence files, and the 454Scaffolds.txt file Genomics

      Newbler output II: contigs and scaffolds sequence files, and the 454Scaffolds.txt file

      The files most people are after when they do an assembly must be these: the actual contig and scaffo...
      03月30日1,342评论
      阅读全文
      Newbler output I: the 454NewblerMetrics.txt file Bioinformatics

      Newbler output I: the 454NewblerMetrics.txt file

      With this post, I’ll start going through the output files newbler generates. Some of these will be d...
      03月30日739评论
      阅读全文
      newbler输出结果文件454ContigGraph.txt内容介绍 Genomics

      newbler输出结果文件454ContigGraph.txt内容介绍

      The single file I’ll discuss today has in fact almost the entire assembly in it, besides the actual ...
      03月30日1,104评论
      阅读全文
      How newbler works Genomics

      How newbler works

      I thought to start by explaining briefly how newbler works. I’ll do this by following the output new...
      03月30日2,0381
      阅读全文

      赞助链接




      随机文章

      • 基因组标准注释文件-Gencode数据库 基因组标准注释文件-Gencode数据库 06/15 11,084
      • De Bruijn graphs(3) De Bruijn graphs(3) 06/06 1,209
      • Velvet使用方法及参数介绍 Velvet使用方法及参数介绍 12/16 8,104
      • 表观遗传学信息如何传递 表观遗传学信息如何传递 03/06 2,964
      • How do sequencing errors affect de Bruijn graphs? How do sequencing errors affect de Bruijn graphs? 06/06 1,636
      • 使用 Edena 进行基因组组装 使用 Edena 进行基因组组装 03/26 2,968
      Copyright © 2011-2022 Public Library of Bioinformatics (PLoB). All Rights Reserved. Sitemap
      • 目录