We are really amateurs, when it comes to Pacific Bio sequences. How amateur are we? A few weeks back...
Genomics
Genomics
Glossary
基因组拼接中常见的名词解释
Read：高通量测序平台产生的序列就称为reads。 Contig：拼接软件基于reads之间的overlap区，拼接获得的序列称为Contig（重叠群）。 Scaffold：基因组de novo测序...
Genomics
Newbler output II: contigs and scaffolds sequence files, and the 454Scaffolds.txt file
The files most people are after when they do an assembly must be these: the actual contig and scaffo...
Glossary
What is scaffold?
A scaffold is a portion of the genome sequence reconstructed from end-sequenced whole-genome shotgun...
Genomics
SSPACE:一款专门做scaffolding的软件
在做基因组拼接的时候，有时候已经获得了一堆contig或者scaffold，然后需要利用另外的一个pair-end或者mate-pair文库进一步做scaffolding的话。用什么软件好呢？ 最近使...