基因数据库下载

2012/05/17评论6,827

下面是Ensembl上的基因数据库下载，主要是哺乳动物，包括基因组序列，核酸序列，蛋白序列，及这些序列在EMBL和NCBI上的注释，还有提供的MYSQL数据库文件，并对物种名称做了一下简单的翻译，方便查找。如果要查找更详细的情况，可以直接上EMBL的网站。

Translate	Species	DNA	cDNA	ncRNA	Protein sequence	Annotated sequence (EMBL)	Annotated sequence (GenBank)	Gene sets
人	Human Homo sapiens	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
小鼠	Mouse Mus musculus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
斑马鱼	Zebrafish Danio rerio	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
羊驼	Alpaca Vicugna pacos	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
变色龙	Anole lizard Anolis carolinensis	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
穿山甲	Armadillo Dasypus novemcinctus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
丛猴	Bushbaby Otolemur garnettii	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
玻璃海鞘	C.intestinalis Ciona intestinalis	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
萨氏海鞘	C.savignyi Ciona savignyi	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
线虫	Caenorhabditis elegans Caenorhabditis elegans	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
猫	Cat Felis catus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
鸡	Chicken Gallus gallus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
黑猩猩	Chimpanzee Pan troglodytes	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
中国鳖	Chinese softshell turtle Pelodiscus sinensis	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
鳕鱼	Cod Gadus morhua	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
腔棘鱼	Coelacanth Latimeria chalumnae	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
奶牛	Cow Bos taurus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
狗	Dog Canis lupus familiaris	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
海豚	Dolphin Tursiops truncatus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
象	Elephant Loxodonta africana	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
雪貂	Ferret Mustela putorius furo	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
果蝇	Fruitfly Drosophila melanogaster	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
河豚	Fugu Takifugu rubripes	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
长臂猿	Gibbon Nomascus leucogenys	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
大猩猩	Gorilla Gorilla gorilla gorilla	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
豚鼠	Guinea Pig Cavia porcellus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
刺猬	Hedgehog Erinaceus europaeus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
马	Horse Equus caballus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
蹄兔	Hyrax Procavia capensis	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
长鼻袋鼠	Kangaroo rat Dipodomys ordii	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
七鳃鳗	Lamprey Petromyzon marinus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
小刺猬猬	Lesser hedgehog tenrec Echinops telfairi	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
猕猴	Macaque Macaca mulatta	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
狨猴	Marmoset Callithrix jacchus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
青鳉	Medaka Oryzias latipes	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
狐蝠科	Megabat Pteropus vampyrus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
蝙蝠	Microbat Myotis lucifugus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
鼠狐猴	Mouse Lemur Microcebus murinus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
负鼠	Opossum Monodelphis domestica	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
猩猩	Orangutan Pongo abelii	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
熊猫	Panda Ailuropoda melanoleuca	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
猪	Pig Sus scrofa	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
鼠兔	Pika Ochotona princeps	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
剑尾鱼	Platyfish Xiphophorus maculatus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
鸭嘴兽	Platypus Ornithorhynchus anatinus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
兔	Rabbit Oryctolagus cuniculus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
大鼠	Rat Rattus norvegicus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
酿酒酵母	Saccharomyces cerevisiae Saccharomyces cerevisiae	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
鼩鼱	Shrew Sorex araneus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
树懒	Sloth Choloepus hoffmanni	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
松鼠	Squirrel Ictidomys tridecemlineatus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
棘鱼	Stickleback Gasterosteus aculeatus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
眼镜猴	Tarsier Tarsius syrichta	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
袋獾	Tasmanian devil Sarcophilus harrisii	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
鲀	Tetraodon Tetraodon nigroviridis	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
罗非鱼	Tilapia Oreochromis niloticus	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
树鼩	Tree Shrew Tupaia belangeri	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
火鸡	Turkey Meleagris gallopavo	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
袋鼠	Wallaby Macropus eugenii	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
非洲爪蟾蜍	Xenopus Xenopus tropicalis	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF
斑胸草雀	Zebra Finch Taeniopygia guttata	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF

原文来自：http://bioinformation.cn/?p=279

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