AMOS的安装和使用

  • A+
所属分类:Bioinformatics

AMOS是最早的比较基因组组装软件,AMOS的安装需要先安装MUMer和Qt。

$ wget http://jaist.dl.sourceforge.net/project/mummer/mummer/3.23/MUMmer3.23.tar.gz
$ tar zxf MUMmer3.23.tar.gz
$ cd MUMmer3.23/
$ make check
$ make install
$ echo PATH=$PWD/:'$PATH' >> ~/.bashrc

$ wget http://download.qt-project.org/official_releases/qt/4.8/4.8.5/qt-everywhere-opensource-src-4.8.5.tar.gz
$ tar zxf qt-everywhere-opensource-src-4.8.5.tar.gz
$ cd qt-everywhere-opensource-src-4.8.5
$ ./configure
$ sudo yum install gstreamer-plugins-base-devel*
$ gmake -j 8
$ sudo gmake install
$ echo 'PTAH=/usr/local/Trolltech/Qt-4.8.5/bin:$PATH' >> ~/.bashrc

$ wget http://nchc.dl.sourceforge.net/project/amos/amos/3.1.0/amos-3.1.0.tar.gz
$ tar zxf amos-3.1.0.tar.gz
$ cd amos-3.1.0
$ ./configure --prefix=/opt/biosoft/amos 
$ make -j 8      #然后报错,接着进行下两步(此步省略了貌似会出其它问题)
$ sed '1i\#include ' src/Align/find-tandem.cc > tmp
$ mv tmp src/Align/find-tandem.cc
$ make -j 8      #继续报错,不管
$ make -j 8      #make 成功
$ make install

原文来自:http://www.chenlianfu.com/?p=1902

avatar

发表评论

:?: :razz: :sad: :evil: :!: :smile: :oops: :grin: :eek: :shock: :???: :cool: :lol: :mad: :twisted: :roll: :wink: :idea: :arrow: :neutral: :cry: :mrgreen: